Shifts, Aneuploidy, and Loss of Heterozygosity Rapid Mechanisms for Generating Genome Diversity: Whole Ploidy

نویسندگان

  • Richard J. Bennett
  • Anja Forche
  • Judith Berman
  • Theodore C. White
  • Keisha Findley
  • Joseph Heitman
  • Dee A. Carter
  • Kyung J. Kwon-Chung
  • Michail S. Lionakis
  • Mihai G. Netea
  • Damian J. Krysan
  • Thomas R. Kozel
چکیده

, the Etiologic Agents of Cryptococcosis gattii Cryptococcus and Cryptococcus neoformans Doering, et al.

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Parasexual Ploidy Reduction Drives Population Heterogeneity Through Random and Transient Aneuploidy in Candida albicans

The opportunistic pathogen Candida albicans has a large repertoire of mechanisms to generate genetic and phenotypic diversity despite the lack of meiosis in its life cycle. Its parasexual cycle enables shifts in ploidy, which in turn facilitate recombination, aneuploidy, and homozygosis of whole chromosomes to fuel rapid adaptation. Here we show that the tetraploid state potentiates ploidy vari...

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GENETICS | INVESTIGATION Parasexual Ploidy Reduction Drives Population Heterogeneity Through Random and Transient Aneuploidy in Candida albicans

The opportunistic pathogen Candida albicans has a large repertoire of mechanisms to generate genetic and phenotypic diversity despite the lack of meiosis in its life cycle. Its parasexual cycle enables shifts in ploidy, which in turn facilitate recombination, aneuploidy, and homozygosis of whole chromosomes to fuel rapid adaptation. Here we show that the tetraploid state potentiates ploidy vari...

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CLImAT: accurate detection of copy number alteration and loss of heterozygosity in impure and aneuploid tumor samples using whole-genome sequencing data

MOTIVATION Whole-genome sequencing of tumor samples has been demonstrated as an efficient approach for comprehensive analysis of genomic aberrations in cancer genome. Critical issues such as tumor impurity and aneuploidy, GC-content and mappability bias have been reported to complicate identification of copy number alteration and loss of heterozygosity in complex tumor samples. Therefore, effic...

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تاریخ انتشار 2014